"The intermediate CA certificate cannot be found for the following certificate chain."
After installed intermediate CA certiticate and removed old intermediate certificates, problem still not resolve. The problem is the trust root certificate - VeriSign Class 3 Public Primary Certification Authority - G5 needed to be deleted.
In the Trusted Root certificate store, please try filtering the root certificate by clicking on the Expiration date header twice, so that the dates are in a descending order.
This will make it easier to locate the VeriSign Class 3 Public Primary Certification Authority - G5 with the expiration date 07/16/2036.
Once you locate the Root above, right click on it and delete it, then restart the services for the website. And retest the installation:
VeriSign SSL Certificate Installation Checker
https://knowledge.verisign.com/support/ssl-certificates-support/index?page=content&id=AR1130
As an additional step you should turn off Auto update to ensure that the Verisign Class 3 Public Primary Certification Authority - G5 Root CA Certificate is not re-installed on the server
1. Go to Start > Settings > Control Panel
2. Click Add Remove Programs
3. Click Add Remove Windows Components
4. Uncheck the check box for Update Root Certificates
